назад
MEGABLAST 2.2.10 [Oct-19-2004]
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences",
J Comput Biol 2000; 7(1-2):203-14.
Database: bs
21 sequences; 4,215,470 total letters
Searching. done
Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
(76 letters)
Score E
Sequences producing significant alignments: (bits) Value
Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 2... 30 0.20
Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 2... 28 0.81
Z99110 Z99110 Bacillus subtilis complete genome (section 7 of 21... 24 13
>Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 21):
from 1807106 to 2014934.
Length = 207829
Score = 30.2 bits (15), Expect = 0.20
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 actgttaatccgtat 45
|||||||||||||||
Sbjct: 39866 actgttaatccgtat 39880
>Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 21): from
3013458 to 3213379.
Length = 199922
Score = 28.2 bits (14), Expect = 0.81
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 51 tggttcgagtccagtcag 68
||||||||||||| ||||
Sbjct: 157770 tggttcgagtccattcag 157753
>Z99110 Z99110 Bacillus subtilis complete genome (section 7 of 21): from
1209742 to 1410982.
Length = 201241
Score = 24.3 bits (12), Expect = 13
Identities = 15/16 (93%)
Strand = Plus / Minus
Query: 35 ttaatccgtatgtcac 50
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Sbjct: 82080 ttaatccgtatatcac 82065
Database: bs
Posted date: Nov 9, 2006 7:50 PM
Number of letters in database: 4,215,470
Number of sequences in database: 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 30
Number of Sequences: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 1000000.0: 3
Number of HSP's better than 1000000.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 76
length of database: 4,215,470
effective HSP length: 15
effective length of query: 61
effective length of database: 4,215,155
effective search space: 257124455
effective search space used: 0
S2: 4 ( 8.4 bits)